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CompuCell3D - Simulation of cell crawling in 3D
03 Feb 2022
Deploys the CompuCell3D simulation of cell crawling in 3D by Fortuna et al. 2020 https://doi.org/10.1016/j.bpj.2020.04.024
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Cancer Evolution in CompuCell3D
27 May 2021 | Contributor(s):: Juliano Ferrari Gianlupi, James A Glazier
Demonstrates implemetation of cancer evolution in CompuCell3D
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Multicellular modeling of SARS-CoV-2 dynamics and virion mediated cell fusion with antiviral drug effects
Tools | 27 Jul 2020 | Contributor(s):: Yafei Wang, Michael Getz, Randy Heiland, Paul Macklin
Simulate SARS-CoV-2 dynamics and virion mediated cell fusion under pharmacodynamics effects with PhysiCell
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CompuCell3D - Simulation of angiogenesis
Tools | 04 Jun 2020 | Contributor(s):: Juliano Ferrari Gianlupi, T.J. Sego
CompuCell3D simulates angiogenesis using chemical signals
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Multiscale Multicellular Modeling of Tissue Function and Disease using CompuCell3D
Online Presentations | 03 Jun 2020 | Contributor(s):: James A Glazier, Juliano Ferrari Gianlupi
Multiscale multicellular models combine representations of subcellular biological networks, cell behaviors, tissue level effects and whole body effects to describe tissue outcomes during development, homeostasis and disease. I will briefly introduce these simulation methodologies, the CompuCell3D...
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Nanopartículas y Protectores Solares (Nanoparticles and Sunscreen)
Teaching Materials | 22 Apr 2020 | Contributor(s):: Nano-Link Center for Nanotechnology Education, Thomas Deits, Jim Marti (editor), Rodfal A. Rodríguez (editor), María T. Rivera (editor)
En esta actividad, los estudiantes son introducidos a la función de los protectores solares y aprenden cómo se pueden utilizar las nanopartículas para proteger a las personas de la radiación ultravioleta (UV). Utilizan papel foto-crómico como sensor UV,...
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Nanoparticles and Sunscreen
Teaching Materials | 16 Apr 2020 | Contributor(s):: Nano-Link Center for Nanotechnology Education, Thomas Deits, Jim Marti (editor), Christopher Kumm
In this module, students are introduced to the function of sunscreen and learn how nanoparticles can be used to protect people from ultraviolet radiation. They use photochromic paper as a UV sensor, place samples of different types of sunscreen over this UV sensor, expose their samples to...
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PhysiCell model for COVID19
Tools | 26 Mar 2020 | Contributor(s):: Randy Heiland, Yafei Wang, Paul Macklin
Prototype 2-D multicellular simulation of COVID19.
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PhysiCell model with SBML intracellular model
Tools | 10 Feb 2020 | Contributor(s):: Randy Heiland
Each cell will have its own intracellular (metabolic) model that will affect the microenvironment.
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pc4thanos : Thanos vs. Avengers multicellular demonstrator
Tools | 31 Jan 2020 | Contributor(s):: Paul Macklin
PhysiCell Thanos vs. Avengers demonstrator for multicellular simulation techniques
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PhysiCell biorobots simulation
Tools | 12 Nov 2019 | Contributor(s):: Randy Heiland, Paul Macklin
2D sim of director, worker, and cargo cells.
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Nanosphere Electrostatics Lab Tutorial
Online Presentations | 11 Nov 2019 | Contributor(s):: Jayanath Chamindu Sandanuwan Kadupitiya Kadupitige, Ballard, Joshua Brendan
Accurate knowledge of ionic structure & dynamics is critical to study nanoparticle dynamics. Nanoparticles are polarized in most solvents. Simulating the dynamics of ions near polarizable nanoparticles is challenging: Need to solve Poisson equation at every timestep....
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Nanoscale Simulations & Engineering Applications: Applications - Self-Assembly in Nanoconfinement
Online Presentations | 04 Feb 2019 | Contributor(s):: Vikram Jadhao
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PhysiCell cancer biorobots simulation
Tools | 28 Jan 2019 | Contributor(s):: Randy Heiland, Paul Macklin
2D simulation of biorobots delivering a drug to cancer cells
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BioMEMS Applications Overview Learning Module
Teaching Materials | 18 Aug 2017 | Contributor(s):: Southwest Center for Microsystems Education (SCME)
This learning module is an overview of some of the major biomedical developments and applications of BioMEMS. There are three activities that provide further exploration into some of these applications, how they are used ad how they work.
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BioMEMS Applications Overview Learning Module - Instructor Guides
Teaching Materials | 18 Aug 2017 | Contributor(s):: Southwest Center for Microsystems Education (SCME)
This learning module is an overview of some of the major biomedical developments and applications of BioMEMS. There are three activities that provide further exploration into some of these applications, how they are used ad how they work.
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Biomolecular Applications of BioMEMS Learning Module - Instructor Guides
Teaching Materials | 18 Aug 2017 | Contributor(s):: Southwest Center for Microsystems Education (SCME)
This learning module is an overview of biomolecules, what are they?, types of biomolecules, and how microtechnology is using biomolecules or exploiting their functions for micro and nano applications. Activities provide the opportunity to better understand the functions of biomolecules,...
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Biomolecular Applications of BioMEMS
Teaching Materials | 18 Aug 2017 | Contributor(s):: Southwest Center for Microsystems Education (SCME)
This learning module is an overview of biomolecules, what are they?, types of biomolecules, and how microtechnology is using biomolecules or exploiting their functions for micro and nano applications. Activities provide the opportunity to better understand the functions of biomolecules,...
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Functionalization Workbench
Tools | 30 Aug 2013 | Contributor(s):: AbderRahman N Sobh, Chen-Yu Li, Nahil Sobh, Aleksei Aksimentiev
Using molecular dynamic simulation - explore the interactions between a molecular structure and substrate when they are linked together.
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[Illinois] Nanopore Sequencing of DNA
Online Presentations | 27 Sep 2013 | Contributor(s):: Aleksei Aksimentiev
The idea of using a nanopore to sequence DNA continues to generate excitement among scientists and entrepreneurs. The spectacular progress in using biological enzymes to enable nanopore sequencing indicates the imminent arrival of nanopores in practical biomedical applications. Even more exciting...