Forces That Govern Life: On the Way to Understanding Intermolecular Interactions

By Lyudmila V. Slipchenko

Department of Chemistry, Purdue University, West Lafayette, IN

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Abstract

Computational modeling of solvent effects remains one of the major challenges in computational chemistry. Ideally, one needs to represent both local short-range and collective long-range interactions, sample solvent degrees of freedom, and ensure sufficient accuracy in describing many small but not negligible terms in the molecular Hamiltonian. Thus, a step from “a safe haven” – gas-phase calculation – to simulations in the condensed phase entails dealing with a much larger system for a much longer time. Generally, it is not possible to make this transition without employing additional approximations. Many fragmentation and embedding methods and polarizable force fields have emerged in recent years aiming at a more reliable description of extended systems. This talk will overview our recent work on the Effective Fragment Potential (EFP) method. EFP is a model potential designed for describing non-covalent interactions. The absence of fitted parameters and a natural partitioning of the interaction energy into Coulomb, polarization, dispersion, and exchange-repulsion terms make it an attractive choice for analysis and interpretation of intermolecular forces. We will discuss recent developments of the EFP method and applications to hydrophilic and hydrophobic hydration and photochemistry of solvated chromophores and photoactive proteins.

Bio

Lyudmila V. Slipchenko

Lyudmila V. Slipchenko is an Associate Professor in the chemistry department at Purdue University. She received her B.S. and M.S. in Applied Mathematics and Physics from Moscow Institute of Physics and Technology and a Ph.D. in Chemistry from the University of Southern California. Her research is focused on the study of electronic structure, electronic excited states, and intermolecular interactions in the condensed phase.

 

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Researchers should cite this work as follows:

  • Lyudmila V. Slipchenko (2017), "Forces That Govern Life: On the Way to Understanding Intermolecular Interactions," https://nanohub.org/resources/26883.

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Location

Physics, Room 239, Purdue University, West Lafayette, IN

Tags

Forces That Govern Life: On the Way to Understanding Intermolecular Interactions
  • Forces that govern life: On the way to understanding intermolecular interactions 1. Forces that govern life: On th… 0
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  • Real chemistry happens in environment! 2. Real chemistry happens in envi… 51.217884551217885
    00:00/00:00
  • Hierarchy of electronic structure methods 3. Hierarchy of electronic struct… 153.52018685352019
    00:00/00:00
  • Smart models for big problems 4. Smart models for big problems 319.1524858191525
    00:00/00:00
  • What is the right way? 5. What is the right way? 656.15615615615616
    00:00/00:00
  • Methodology: Effective Fragment Potential method (EFP) 6. Methodology: Effective Fragmen… 759.35935935935936
    00:00/00:00
  • Gecko-logy, or science of intermolecular interactions 7. Gecko-logy, or science of inte… 830.69736403069737
    00:00/00:00
  • Make-up of non-covalent interactions 8. Make-up of non-covalent intera… 855.2886219552887
    00:00/00:00
  • Make-up of non-covalent interactions 9. Make-up of non-covalent intera… 917.61761761761761
    00:00/00:00
  • Make-up of non-covalent interactions 10. Make-up of non-covalent intera… 1110.2102102102103
    00:00/00:00
  • Make-up of non-covalent interactions 11. Make-up of non-covalent intera… 1204.4044044044044
    00:00/00:00
  • Make-up of non-covalent interactions 12. Make-up of non-covalent intera… 1268.5018351685019
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  • Quiz! 13. Quiz! 1277.711044377711
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  • Methodology: Effective Fragment Potential method (EFP) 14. Methodology: Effective Fragmen… 1403.8705372038705
    00:00/00:00
  • EFP set-up 15. EFP set-up 1438.8054721388055
    00:00/00:00
  • S22 dataset of intermolecular interactions 16. S22 dataset of intermolecular … 1528.1281281281281
    00:00/00:00
  • S22: performance of popular methods 17. S22: performance of popular me… 1683.5168501835169
    00:00/00:00
  • EFP in a nutshell 18. EFP in a nutshell 1872.3056389723058
    00:00/00:00
  • LIBEFP: stand-alone EFP implementation 19. LIBEFP: stand-alone EFP implem… 1879.1458124791459
    00:00/00:00
  • LIBEFP 20. LIBEFP 2049.4494494494497
    00:00/00:00
  • QM / EFP: toward full embedding 21. QM / EFP: toward full embeddin… 2150.6172839506175
    00:00/00:00
  • Few words about chemistry of cocktails 22. Few words about chemistry of c… 2385.7524190857525
    00:00/00:00
  • Ions at molecular hydrophobic interface 23. Ions at molecular hydrophobic … 2477.6776776776778
    00:00/00:00
  • TBA in aqueous NaF and NaI solutions 24. TBA in aqueous NaF and NaI sol… 2499.3326659993327
    00:00/00:00
  • Raman-MCR spectroscopy: Solute-correlated spectra of TBA in NaI solution 25. Raman-MCR spectroscopy: Solute… 2751.217884551218
    00:00/00:00
  • Theory: TBA CH stretch frequency shifts in 2.7 M aqueous NaI solution 26. Theory: TBA CH stretch frequen… 2825.2585919252588
    00:00/00:00
  • Solute-solvent tete-a-tete 27. Solute-solvent tete-a-tete 2903.4701368034703
    00:00/00:00
  • Solvatochromism in para-nitroaniline 28. Solvatochromism in para-nitroa… 2981.2145478812145
    00:00/00:00
  • Solvatochromic shifts with QM/EFP 29. Solvatochromic shifts with QM/… 3115.9492826159494
    00:00/00:00
  • Ultrafast dynamics of pNA Tn Tm 30. Ultrafast dynamics of pNA Tn T… 3148.6486486486488
    00:00/00:00
  • Solvatochromic shifts in p-nitroaniline 31. Solvatochromic shifts in p-nit… 3206.43977310644
    00:00/00:00
  • Energy relaxation in PNA 32. Energy relaxation in PNA 3211.444778111445
    00:00/00:00
  • Moving to biology 33. Moving to biology 3313.7804471137806
    00:00/00:00
  • BioEFP: extending EFP to biology 34. BioEFP: extending EFP to biolo… 3315.2819486152821
    00:00/00:00
  • Preparing parameters for bio-fragments 35. Preparing parameters for bio-f… 3317.3840507173841
    00:00/00:00
  • Cryptochromes Cryptochromes Singlet. 36. Cryptochromes Cryptochromes Si… 3333.1998665332
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  • Cryptochrome: importance validation polarization 37. Cryptochrome: importance valid… 3336.46980313647
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  • Conclusions 38. Conclusions 3339.0056723390057
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  • Acknowledgements 39. Acknowledgements 3403.5035035035035
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