PhysiCell: Extracellular Matrix Modeling

By John Metzcar1, Ben Duggan2, Randy Heiland, Daniel Matthew Murphy3, Paul Macklin1

1. Intelligent Systems Engineering, Indiana University 2. Computer Science, Indiana University 3. Informatics, Indiana University

A computational model of multicellular communication mediated through extracellular matrix. The app also demonstrates an extracellular matrix extension to the modeling and simulation platform PhysiCell.

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Version 1.0.0 - published on 29 Dec 2022

doi:10.21981/W1AR-JV38 cite this

Open source: license | download

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Usage

World usage

Location of all "PhysiCell: Extracellular Matrix Modeling" Users Since Its Posting

Cumulative Simulation Users

41

5 7 7 7 11 12 12 12 12 13 13 13 14 15 15 16 16 16 18 18 19 19 19 19 19 20 20 20 21 21 21 22 23 23 40 40 40 41

Users By Organization Type
Type Users
Unidentified 39 (95.12%)
Educational - University 1 (2.44%)
National Lab 1 (2.44%)
Users by Country of Residence
Country Users
us UNITED STATES 1 (50%)
cn CHINA 1 (50%)

Simulation Runs

311

39 62 69 69 92 98 118 118 129 135 143 143 156 158 162 166 166 166 177 177 188 188 188 188 188 211 217 217 222 222 222 225 227 227 300 300 305 311
Overview
Average Total
Wall Clock Time 2.89 days 266.24 days
CPU time 17.76 minutes 1.13 days
Interaction Time 2.51 hours 9.62 days