Aug 24 2020
ICANM2020: 8th International Conference & Exhibition on Advanced & Nano Materials
Cells random walking at different speeds
04 Jun 2020 | Contributor(s):: Juliano Ferrari Gianlupi, T.J. Sego
Cells random walking at different speeds implemented through the motility plugin
CompuCell3d cell sorting in a hexagonal lattice
Showcases hexagonal lattice use in CompuCell3D by simulating cell sorting by difference in contact energies in a hexagonal lattice.
Delta-Notch signaling in a group of cells
CompuCell3D can solve individual cell's ODE and have the information of one cell affect another (implemented trough SBML)
Bacterium Macrophage simulation in CompuCell3D v4
Macrophage hunts bacterium in a maze
Simulation of angiogenesis in CompuCell3D
CompuCell3D simulates angiogenesis using chemical signals
Multiscale Multicellular Modeling of Tissue Function and Dsease using CompuCell3D
03 Jun 2020 | | Contributor(s):: James A Glazier, Juliano Ferrari Gianlupi
I will briefly introduce these simulation methodologies, the CompuCell3D simulation environment and their applications, then focus on a multiscale simulation of an acute primary infection of an epithelial tissue infected by a virus like SARS-CoV-2, a simplified cellular immune response and viral...
COVID 19 Virtual Tissue Model - Tissue Infection and Immune Response Dynamics
26 May 2020 | | Contributor(s):: Josua Oscar Aponte-Serrano, T.J. Sego
Simulates tissue and immune system interactions during a viral lung infection
PhysiBoSSa: cell fate decision in TNF Boolean model
13 May 2020 | | Contributor(s):: Gerard Pradas, Arnau Montagud, Miguel Ponce de Leon
PhysiBoSSa model of the cell fate decision in TNF Boolean model in a multicellular multiscale system
When a Cell Talks, Everyone Listens!
06 May 2020 | | Contributor(s):: Nicole Harper, NNCI Nano
This is a two part lesson focused on diffusion and cell communication. In Part 1, students will use the classic starch iodine diffusion activity. This activity can be done in any life science class. It can be used as an introduction to diffusion or as a refresher activity for advanced...
Shape Changing Nanocontainers Tutorial
22 Apr 2020 | | Contributor(s):: Vikram Jadhao
Course material companion materials for nanoparticle shape lab. Four files are associated with this course material: two video lectures, companion powerpoint slides, and a homework problem set.
Using Biosynthesized Silver Nanoparticles to kill Antibiotic Resistant E. Coli.
17 Apr 2020 | | Contributor(s):: Michael Falck, James Marti, NNCI Nano
In this lab students will become familiar with biosynthesized silver nanoparticles, or bSNP’s. As part of the lesson, students will learn the potential of using biosynthesized silver nanoparticles for use as antimicrobials against antibiotic-resistant bacteria ...
A virion infected-cell response tissue simulator
13 Apr 2020 | | Contributor(s):: Yafei Wang, Randy Heiland, Paul Macklin
Simulate infected cell response to virus with PhysiCell
A virion replication tissue simulator
Simulate virus replication dynamics with PhysiCell
Souffle: Virus Capsid Assembly Lab
01 Apr 2020 | | Contributor(s):: Nilsson, Lauren, JCS Kadupitiya, Vikram Jadhao
Simulate assembly of flexible capsomeres into virus capsids and oligomers
PhysiCell model for COVID19
26 Mar 2020 | | Contributor(s):: Randy Heiland, Paul Macklin
Prototype 2-D multicellular simulation of COVID19.
Mechanics Training App for PhysiCell
14 Feb 2020 | | Contributor(s):: Aneequa Sundus, Furkan Kurtoglu, Mishler, Daniel S, Randy Heiland, Paul Macklin
Training application for "Mechanics" concept in PhysiCell.
Volume Training App for PhysiCell
10 Feb 2020 | | Contributor(s):: Furkan Kurtoglu, Aneequa Sundus
Training application for "Volume" concept in PhysiCell.
05 Feb 2020 | | Contributor(s):: Dr. Lisa Siedman, Jeanette Mowery, Kyle Forgette, Dr. James Marti, Nano-Link Center for Nanotechnology Education
This module introduces micelles and the concept of critical micelle concentration (CMC). Micelles have important applications in biotechnology. Micelles are sometimes used to deliver drugs to their target in the body. Micelles are also sometimes used to deliver genes into plant cells in...
pc4thanos : Thanos vs. Avengers multicellular demonstrator
31 Jan 2020 | | Contributor(s):: Paul Macklin
PhysiCell Thanos vs. Avengers demonstrator for multicellular simulation techniques