Fun Experiments You Can Only Do With Frogs
08 Jul 2021 | | Contributor(s):: Rebecca W. Heald
Our studies aim to reveal underlying principles of spindle assembly and biological size control, as well as the molecular basis of variation that contributes to genomic instability and evolution. This talk will focus on the nano-scale aspects and include some single molecule experiments our lab...
Rebecca W. Heald
Tuberculosis Model Incorporating Treatment, Vaccination, and Antibiotic Resistance
27 May 2021 | | Contributor(s):: Antonio Zdanis Neher
Run though an interactive application to learn more about the consequences of antibiotic resistant pathogens through the lens of Tuberculosis.
Cancer Evolution in CompuCell3D
27 May 2021 | | Contributor(s):: Juliano Ferrari Gianlupi, James A Glazier
Demonstrates implemetation of cancer evolution in CompuCell3D
FocalPointPlasticity Plugin Demo
19 May 2021 | | Contributor(s):: Juliano Ferrari Gianlupi, T.J. Sego
This simple demo shows basic functionality of FocalPointPlasticity and how link rigidity affects cell behaviors.
PhysiCell simulation of GBM tumour under oHSV1 treatment
28 Mar 2021 | | Contributor(s):: Adrianne Jenner, Randy Heiland, Paul Macklin
Simulation for GBM fragment growth under oHSV1 treatment published in Jenner et al. (2021)
Winter Interactive nanoBIO Workshop
04 Feb 2021 | | Contributor(s):: Ballard, Joshua Brendan (editor)
The Winter Interactive nanoBIO Workshop will walk students and researchers through how to understand a variety of biological problems using simulations based on cloud-based tools on nanoHUB or other easy to use platforms.
Deep Learning for Time Series Illustrated by COVID-19 Infection Studies
04 Feb 2021 | | Contributor(s):: Geoffrey C. Fox
We show that one can study several sets of sequences or time-series in terms of an underlying evolution operator which can be learned with a deep learning network.
How Simple Cell-Cell Interactions Lead to Complex Multicellular Dynamics
04 Feb 2021 | | Contributor(s):: Paul Macklin
In this talk, we use agent-based simulation models to simulate (1) individual cell behaviors, (2) cell-cell interactions, and (3) cell-environment interactions to show how simple rules can give rise to complex multicellular phenomena. We showcase and explore free, interactive online tools to...
Cancer Games: Interactive Simulation of the Effect of Resource Limitation on Cancer Somatic Evolution using nanoHUB CompuCell3D
04 Feb 2021 | | Contributor(s):: James A Glazier
In this interactive mini-workshop we will use a very simple model of cancer somatic evolution and resource limitation based on one originally proposed by Heiko Enderling.
Shape-changing Nanoparticles for Nanomedicine Applications
04 Feb 2021 | | Contributor(s):: Vikram Jadhao
I will describe the nanoHUB tool “Nanoparticle Shape Lab” that enables simulations of the shape deformation of charged nanoparticles for a broad variety of nanoparticle material properties including nanoparticle surface charge, pattern, elasticity and solution conditions such...
Biology of COVID-19 Attack on Epithelial Cells, understood from a Modeling and Simulation Perspective
n this session, we describe a community-driven effort to iteratively develop a multiscale, spatially-resolved open source model of SARS-CoV-2 dynamics and immune response in tissues.
U-Net Convolutional Neural Networks for Image Segmentation: Application to Scanning Electron Microscopy Images of Graphene
01 Feb 2021 | | Contributor(s):: Aagam Rajeev Shah
This tutorial introduces you to U-Net, a popular convolutional neural network commonly developed for image segmentation in biomedicine. Using an assembled data set, you will learn how to create and train a U-Net neural network, and apply it to segment scanning electron microscopy images of...
A Vaccine Model for COVID-19
25 Jan 2021 | | Contributor(s):: Kali Nicole Konstantinopoulos, James A Glazier (editor), Josua Oscar Aponte-Serrano (editor)
Simulate the introduction of a vaccine in the COVID-19 pandemic, focused on the US.
PhysiCell 3D tumor
20 Jan 2021 | | Contributor(s):: Randy Heiland, Paul Macklin, Koudoro, Serge, Javier Guaje
Simulate a 3D spheroid cancer tumor with PhysiCell
Influenza In Host Kinetics Model
19 Dec 2020 | | Contributor(s):: Hanna, Tyler Scott, James A Glazier, Josua Oscar Aponte-Serrano
Module explaining the in-host viral kinetics of IAV under different conditions.
Cycle Training App for PhysiCell
18 Dec 2020 | | Contributor(s):: Furkan Kurtoglu, Aneequa Sundus, Kali Nicole Konstantinopoulos, Drew Willis, Mary Chen, Randy Heiland, Paul Macklin
Training application for "Cycle" concept in PhysiCell.
10 Dec 2020 |
The Winter Interactive nanoBIO Workshop will walk students and researchers through how to understand a variety of biological problems using simulations based on cloud-based tools on nanoHUB or other easy to use platforms. Each session will include some background material to understand the nature...
Saliva-Based Testing for COVID-19
22 Nov 2020 | | Contributor(s):: Mohit Verma
The Verma lab is developing a molecular test for SARS-CoV-2 that detects the RNA and produces a color change in less than one hour. Using saliva as the sample, this test is easier to use at the point-of-care.
Three-Type Multicellular Simulation Lab
09 Nov 2020 | | Contributor(s):: Paul Macklin, Randy Heiland
An analog of the 3-body problem: modeling 3 interacting cell types in a dynamic environment