Changing termination of the poly
Hi all,
I am trying to use this software to build Poly(dimethyloxilate), however I want the termination to be CH3 instead of H. Henceforth I am trying to write my z matrices like below :
4 # Number of backbone atoms C_ O_ 1 1.09 N_ 2 1.09 1 112 C_ 3 1.09 2 112 1 120.0 C_ 3 1.79 2 107 1 57.3 H_ 5 1.10 3 112 2 -58.3 H_ 5 1.10 3 112 2 61.8 H_ 5 1.10 3 112 2 -178.0 C_ 3 1.79 2 107 1 -57.3 H_ 9 1.10 3 112 2 -58.3 H_ 9 1.10 3 112 2 61.8 H_ 9 1.10 3 112 2 -178.0 H_ 1 1.10 2 112 3 -58.3 H_ 1 1.10 2 112 3 61.8 H_ 1 1.10 2 112 3 -178.0 H_ 4 1.10 3 112 2 -58.3 H_ 4 1.10 3 112 2 61.8 H_ 4 1.10 3 112 2 -178.0
yet I am getting error. Hence firstly, am I doing this correctly? If not, how can I do it? Also, I see the previous post regarding Si as part of the backbone, however I the online software did not allow Si. (basically replace N with Si). Am I doing something wrong?
Best,
Ben