Tools (61-80 of 149)

1. Nanosphere Electrostatics Lab

   Tools | 22 May 2018 | Contributor(s):: JCS Kadupitiya, Nicholas Brunk, Sohile Ali, Fox, Geoffrey C., Vikram Jadhao

   The Nanosphere Electrostatics Lab empowers users to simulate the self-assembly of ions near a spherically shaped nanoparticle, and extract the effective electrostatic properties.

2. pc4nanobio: cancer nanotherapy simulator

   Tools | 19 Apr 2018 | Contributor(s):: Yafei Wang, Randy Heiland, Paul Macklin

   Simulate cancer response to drug-loaded nanoparticles

3. The Effective Fragment Potential Method Calculation Tool

   0.0 out of 5 stars 

   Tools | 07 Jun 2017 | Contributor(s):: Lyudmila V. Slipchenko, Pradeep Kumar Gurunathan, Hanjing Xu

   LIBEFP facilitates extension of unique electronic structure methodologies designed for accurate simulations in the gas phase to condensed phases via QM/EFP. This tool provides a easy-to-use GUI for input generation and output visualization.

4. Ions in Nanoconfinement

   0.0 out of 5 stars 

   Tools | 06 Dec 2017 | Contributor(s):: Kadupitige Kadupitiya, Nasim Anousheh, Suresh Marru, Fox, Geoffrey C., Vikram Jadhao

   The Ions in Nanoconfinement app empowers users to simulate ions confined between material surfaces that are nanometers apart, and extract the associated ionic structure.

5. Atomistic Polymer Workflow Notebook

   0.0 out of 5 stars 

   Tools | 19 Oct 2017 | Contributor(s):: Benjamin P Haley

   Run PolymerModeler and nuSIMM tools to create atomistic polymer systems

6. Mechanics of Crystalline Nano Cellulose Nanofilm

   0.0 out of 5 stars 

   Tools | 06 Jul 2017 | Contributor(s):: Joshua Leonardo, Mehdi Shishehbor, Pablo Daniel Zavattieri

   Simulation of tensile tests on your own Crystalline Nano Cellulose structures.

7. Glass transition temperature notebook

   0.0 out of 5 stars 

   Tools | 22 May 2017 | Contributor(s):: Benjamin P Haley, Lorena Alzate-Vargas

   Calculate the glass transition temperature of an atomistic, amorphous system by running MD simulations in a notebook

8. DNA Origami Visualization Tools

   0.0 out of 5 stars 

   Tools | 12 Sep 2016 | Contributor(s):: Jessica Nash

   Visualize DNA origami designs

9. Demo of Loading and Visualizing Proteins from the RCSB Protein Data Bank

   0.0 out of 5 stars 

   Tools | 14 Dec 2016 | Contributor(s):: Martin Hunt

   Demo of Loading and Visualizing Proteins from the RCSB Protein Data Bank

10. Atomic Resolution Brownian Dynamics

    0.0 out of 5 stars 

    Tools | 09 Nov 2016 | Contributor(s):: Chris Maffeo

    GPU-accelerated Brownian dynamics simulation tool for biomolecular and nanotechnological systems

11. Coarse Graining of Crystalline Cellulose

    0.0 out of 5 stars 

    Tools | 29 Jul 2016 | Contributor(s):: Kuo Tian, Mehdi Shishehbor, Pablo Daniel Zavattieri

    Bio-inspired Crystalline Nano-Cellulose coarse graining toolkit

12. ENBIOS-2D Lab

    0.0 out of 5 stars 

    Tools | 18 Jul 2016 | Contributor(s):: Aldi Hoxha, Paolo Scarbolo, Andrea Cossettini, Federico Pittino, Luca Selmi

    A tool to simulate Ion Sensitive Field Effect Transistors in two dimensions

13. ENBIOS-1D Lab

    0.0 out of 5 stars 

    Tools | 14 Dec 2015 | Contributor(s):: Paolo Scarbolo, Federico Pittino, Matteo , Andrea Cossettini, Luca Selmi

    A tool to simulate Electrolyte/Insulator/Semiconductor systems in one dimension

14. LegoGen

    0.0 out of 5 stars 

    Tools | 05 Feb 2016 | Contributor(s):: Scott Michael Louis Slone, Chris Maffeo, AbderRahman N Sobh, Aleksei Aksimentiev

    Tool workflow for building DNA Brick structures automatically.

15. Molecular Dynamics Showcase Builder

    0.0 out of 5 stars 

    Tools | 09 Nov 2015 | Contributor(s):: Michael McLennan, Nicholas K Kisseberth, George A. Howlett, Jim Slopsema, Aleksei Aksimentiev, Chen-Yu Li

    Tool to create showcases for the Molecular Dynamics Showcase viewer.

16. A computational method for rapid prediction of amyloid beta-fibril structures

    2.0 out of 5 stars 

    Tools | 23 Mar 2015 | Contributor(s):: Hamed Tabatabaei Ghomi, Markus A. Lill

    A computational method for rapid prediction of amyloid beta-fibril structures

17. Granular Crystals

    0.0 out of 5 stars 

    Tools | 22 Jul 2015 | Contributor(s):: Juan Camilo Lopez, Rohit Kaushal Tripathy, Ilias Bilionis, Marcial Gonzalez

    Allows the user to sample properties of granular chains under uncertainty propagation

18. Gaussian processes 2D

    0.0 out of 5 stars 

    Tools | 26 Jun 2015 | Contributor(s):: Ilias Bilionis, Yinuo Li, Juan Camilo Lopez

    Gaussian Process 2D Sampling

19. Gaussian processes 1D

    0.0 out of 5 stars 

    Tools | 10 Jun 2015 | Contributor(s):: Ilias Bilionis, Juan Camilo Lopez, Yinuo Li

    Allows the user to sample functions from a Gaussian process.

20. Traction Force Microscopy

    0.0 out of 5 stars 

    Tools | 17 Apr 2014 | Contributor(s):: Bara Saadah, AbderRahman N Sobh, Alireza Tofangchi

    This is a tool for particle motion tracking with respect to physical forces.