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Death Training App for PhysiCell
Tools | 28 Jan 2020 | Contributor(s):: Furkan Kurtoglu, Aneequa Sundus, Randy Heiland, Paul Macklin
Training application for "Death" concept in PhysiCell.
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Golden Opportunities: Gold Nanoparticles for Biomedical Applications
Online Presentations | 14 Jan 2020 | Contributor(s):: Catherine J. Murphy
In this talk I will discuss how these nanoparticles are prepared, how their surface chemistry can be tuned, how apparent cytotoxicity can be traced back to reagents in the synthesis rather than the particles per se, how protein orientation can be controlled on their surfaces, how cells respond...
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Gelatin Microfluidics
Teaching Materials | 13 Jan 2020 | Contributor(s):: Javier Cervantes, NNCI Nano
This lab shows the importance of channel design in biotechnology and nanotechnology and the methods used to study the behavior of fluids as they flow through a channel. Students will create and test a microfluidic device by creating narrow channels in gelatin, injecting dye in the...
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Lab on a Slab: Microfluidics Activity
Teaching Materials | 13 Jan 2020 | Contributor(s):: John Gomm, NNCI Nano
Microfluidics is a technique for manipulating liquid samples. With one drop of liquid sample, small devices and channels can be used with nanoparticles for sensitive detection of chemicals. In this lab, students will create a fluidic device with agar gel and use it to test and diagnose three...
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Nanoparticle Shape Lab
Tools | 10 Jan 2020 | Contributor(s):: JCS Kadupitiya, Nicholas E. Brunk, Vikram Jadhao
Simulates the low-energy shapes of nanocontainers over a wide range of solution conditions
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PhysiCell: Extracellular Matrix Modeling
Tools | 10 Dec 2019 | Contributor(s):: John Metzcar, Ben Duggan, Randy Heiland, Daniel Matthew Murphy, Paul Macklin
An extracellular matrix model developed in PhysiCell.
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PhysiCell workshop training
Tools | 13 Nov 2019 | Contributor(s):: Randy Heiland
Provide a general purpose PhysiCell app for training.
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PhysiCell biorobots simulation
Tools | 12 Nov 2019 | Contributor(s):: Randy Heiland, Paul Macklin
2D sim of director, worker, and cargo cells.
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Biological 3D Structures by Cryo-EM: Challenges in Computations and Instruments
Online Presentations | 23 Oct 2019 | Contributor(s):: Wen Jiang
Single particle cryo-EM is revolutionizing structural biology. Many structures of viruses and protein complexes have been determined to 2-4 Å resolutions. While stable structures that can be expressed/purified in large quantities can be solved routinely, the dynamic compositions and...
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Motility Training App for PhysiCell
Tools | 17 Oct 2019 | Contributor(s):: Furkan Kurtoglu, Aneequa Sundus, Kali Nicole Konstantinopoulos, Drew Willis, Mary Chen, Randy Heiland, Paul Macklin
Training application for "Motility" concept in PhysiCell.
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Soft Materials for Studying Hard Biological Problems
Online Presentations | 15 Oct 2019 | Contributor(s):: Kristi S. Anseth
This talk will illustrate how we leverage these and other reversible chemistries to create biologically responsive hydrogel matrices, and employ them to study the effects of matricellular signaling on diverse cellular functions and processes. For example, we exploit...
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Motility Training App
Tools | 20 Sep 2019 | Contributor(s):: Furkan Kurtoglu, Aneequa Sundus, Kali Nicole Konstantinopoulos, Mary Chen, Drew Willis, Randy Heiland, Paul Macklin
Training application for "Motility" concept in PhysiCell.
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Tellurium
Tools | 26 Aug 2019 | Contributor(s):: Somogyi, Andy T
1.0
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Soft Electronic and Microfluidic Systems for the Skin
Online Presentations | 23 May 2019 | Contributor(s):: John A. Rogers
This talk describes the key ideas, and presents some of the most recent device examples, including wireless, skin-like electronic 'tattoos' for continuous monitoring of vital signs in neonatal intensive care, microfluidic/electronic platforms that can capture, store and perform...
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Multi-species Biofilm on Wound Surface
Tools | 01 May 2019 | Contributor(s):: Furkan Kurtoglu, Aneequa Sundus
This is a class project that aims modeling two-species biofilm that grows on a wound
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AMIGOS - Hypoxia
Tools | 25 Apr 2019 | Contributor(s):: Furkan Kurtoglu, John Metzcar, Kali Nicole Konstantinopoulos, Timothy M Mahajan, Randy Heiland, Paul Macklin
Modeling Tumor in Hypoxic Condition
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PhysiCell: infected system and off-site immune system
Tools | 23 Apr 2019 | Contributor(s):: Parichit Sharma, Yafei Wang
Studying the interaction between an ODE driven offsite system and a system under invasion through Agent Based Modelling in PhysiCell.
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Replication Competent Oncolytic Virus expressing secretable trimeric TRAIL: hypothesis testing
Tools | 23 Apr 2019 | Contributor(s):: Adrianne Jenner, Paul Macklin
Using PhysiCell to simulate a replication competent oncolytic virus expressing secretable trimeric TRAIL which induces apoptosis in nearby cells
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Wound Healing - Physicell
Tools | 22 Apr 2019 | Contributor(s):: Juliano Ferrari Gianlupi, Vedang Narain
Wound healing simulation using physicell
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Replication Competent Oncolytic Virus in Epithelial cell layer
Tools | 18 Apr 2019 | Contributor(s):: Adrianne Jenner, Paul Macklin
PhysiCell simulation of a replication competent oncolytic virus release from two veins, diffusing through a layer of epithelial cells.