Tags: PhysiCell

Description

PhysiCell

PhysiCell aims to provide a robust, scalable code for simulating large systems of cells in 3-D tissues on standard desktop computers.

PhysiCell Website

All Categories (1-20 of 33)

  1. PhysiCell model for tumor hypoxia

    07 Aug 2020 | Contributor(s):: Lima Da Rocha, Heber, Paul Macklin

    Multicellular simulation in 2-D of tumor hypoxia.

  2. COVID-19 data analysis

    07 Aug 2020 | Contributor(s):: Randy Heiland, Paul Macklin

    Perform data analysis in a Jupyter notebook using data from the pc4covid19 tool.

  3. A virion pharmacodynamics response tissue simulator

    27 Jul 2020 | Contributor(s):: Yafei Wang, Randy Heiland, Paul Macklin

    Simulate virus pharmacodynamics response with PhysiCell

  4. PhysiBoSSa: cell fate decision in TNF Boolean model

    13 May 2020 | | Contributor(s):: Gerard Pradas, Arnau Montagud, Miguel Ponce de Leon

    PhysiBoSSa model of the cell fate decision in TNF Boolean model in a multicellular multiscale system

  5. PhysiBoSSa Simulation with ECM

    20 Apr 2020 | | Contributor(s):: Marco Ruscone, Vincent Noel, Laurence Calzone, Gaelle Letort, Arnau Montagud

    Agent based multicellular simulation with extracellular matrix interaction

  6. A virion infected-cell response tissue simulator

    13 Apr 2020 | | Contributor(s):: Yafei Wang, Randy Heiland, Paul Macklin

    Simulate infected cell response to virus with PhysiCell

  7. A virion replication tissue simulator

    13 Apr 2020 | | Contributor(s):: Yafei Wang, Randy Heiland, Paul Macklin

    Simulate virus replication dynamics with PhysiCell

  8. A virion endocytosis tissue simulator

    13 Apr 2020 | | Contributor(s):: Yafei Wang, Randy Heiland, Paul Macklin

    Simulate virus endocytosis (internalization), ACE2 receptor dynamics with PhysiCell

  9. PhysiCell model for COVID19

    26 Mar 2020 | | Contributor(s):: Randy Heiland, Yafei Wang, Paul Macklin

    Prototype 2-D multicellular simulation of COVID19.

  10. Mechanics Training App for PhysiCell

    14 Feb 2020 | | Contributor(s):: Aneequa Sundus, Furkan Kurtoglu, Mishler, Daniel S, Randy Heiland, Paul Macklin

    Training application for "Mechanics" concept in PhysiCell.

  11. PhysiCell model with SBML intracellular model

    10 Feb 2020 | | Contributor(s):: Randy Heiland

    Each cell will have its own intracellular (metabolic) model that will affect the microenvironment.

  12. Volume Training App for PhysiCell

    10 Feb 2020 | | Contributor(s):: Furkan Kurtoglu, Aneequa Sundus

    Training application for "Volume" concept in PhysiCell.

  13. pc4thanos : Thanos vs. Avengers multicellular demonstrator

    31 Jan 2020 | | Contributor(s):: Paul Macklin

    PhysiCell Thanos vs. Avengers demonstrator for multicellular simulation techniques

  14. Death Training App for PhysiCell

    28 Jan 2020 | | Contributor(s):: Furkan Kurtoglu

    Training application for "Death" concept in PhysiCell.

  15. PhysiCell: Extracellular Matrix Modeling

    10 Dec 2019 | | Contributor(s):: John Metzcar, Ben Duggan, Daniel Matthew Murphy, Paul Macklin

    An extracellular matrix model developed in PhysiCell.

  16. PhysiCell workshop training

    13 Nov 2019 | | Contributor(s):: Randy Heiland

    Provide a general purpose PhysiCell app for training.

  17. PhysiCell biorobots simulation

    12 Nov 2019 | | Contributor(s):: Randy Heiland, Paul Macklin

    2D sim of director, worker, and cargo cells.

  18. Motility Training App for PhysiCell

    17 Oct 2019 | | Contributor(s):: Furkan Kurtoglu, Aneequa Sundus, Kali Nicole Konstantinopoulos, Drew Willis, Mary Chen, Randy Heiland, Paul Macklin

    Training application for "Motility" concept in PhysiCell.

  19. Motility Training App

    20 Sep 2019 | | Contributor(s):: Furkan Kurtoglu, Aneequa Sundus, Kali Nicole Konstantinopoulos, Mary Chen, Drew Willis, Randy Heiland, Paul Macklin

    Training application for "Motility" concept in PhysiCell.

  20. Multi-species Biofilm on Wound Surface

    01 May 2019 | | Contributor(s):: Furkan Kurtoglu, Aneequa Sundus

    This is a class project that aims modeling two-species biofilm that grows on a wound