Tags: PhysiCell

Description

PhysiCell

PhysiCell aims to provide a robust, scalable code for simulating large systems of cells in 3-D tissues on standard desktop computers.

PhysiCell Website

All Categories (1-20 of 40)

  1. PhysiCell simulation of GBM tumour under oHSV1 treatment

    28 Mar 2021 | Contributor(s):: Adrianne Jenner, Randy Heiland, Paul Macklin

    Simulation for GBM fragment growth under oHSV1 treatment published in Jenner et al. (2021)

  2. How Simple Cell-Cell Interactions Lead to Complex Multicellular Dynamics

    04 Feb 2021 | | Contributor(s):: Paul Macklin

    In this talk, we use agent-based simulation models to simulate (1) individual cell behaviors, (2) cell-cell interactions, and (3) cell-environment interactions to show how simple rules can give rise to complex multicellular phenomena. We showcase and explore free, interactive online tools to...

  3. Biology of COVID-19 Attack on Epithelial Cells, understood from a Modeling and Simulation Perspective

    04 Feb 2021 | | Contributor(s):: Paul Macklin

    n this session, we describe a community-driven effort to iteratively develop a multiscale, spatially-resolved open source model of SARS-CoV-2 dynamics and immune response in tissues.

  4. PhysiCell 3D tumor

    20 Jan 2021 | | Contributor(s):: Randy Heiland, Paul Macklin, Koudoro, Serge, Javier Guaje

    Simulate a 3D spheroid cancer tumor with PhysiCell

  5. Cycle Training App for PhysiCell

    18 Dec 2020 | | Contributor(s):: Furkan Kurtoglu, Aneequa Sundus, Kali Nicole Konstantinopoulos, Drew Willis, Mary Chen, Randy Heiland, Paul Macklin

    Training application for "Cycle" concept in PhysiCell.

  6. Three-Type Multicellular Simulation Lab

    09 Nov 2020 | | Contributor(s):: Paul Macklin, Randy Heiland

    An analog of the 3-body problem: modeling 3 interacting cell types in a dynamic environment

  7. PhysiBoSS simulation of COVID19 infection

    27 Oct 2020 | | Contributor(s):: Vincent Noel, Miguel Ponce de Leon, Anna Niarakis, Laurence Calzone, Alfonso Valencia, Arnau Montagud

    PhysiBoSS-COVID: the Boolean modelling of COVID-19 signalling pathways in a multicellular simulation framework

  8. PhysiCell model for tumor hypoxia

    07 Aug 2020 | | Contributor(s):: Lima Da Rocha, Heber, Paul Macklin, Furkan Kurtoglu

    Multicellular simulation in 2-D of tumor hypoxia.

  9. COVID-19 data analysis

    07 Aug 2020 | | Contributor(s):: Randy Heiland, Paul Macklin

    Perform data analysis in a Jupyter notebook using data from the pc4covid19 tool.

  10. A virion pharmacodynamics response tissue simulator

    27 Jul 2020 | | Contributor(s):: Yafei Wang, Randy Heiland, Paul Macklin

    Simulate virus pharmacodynamics response with PhysiCell

  11. PhysiBoSSa: cell fate decision in TNF Boolean model

    13 May 2020 | | Contributor(s):: Gerard Pradas, Arnau Montagud, Miguel Ponce de Leon

    PhysiBoSSa model of the cell fate decision in TNF Boolean model in a multicellular multiscale system

  12. PhysiBoSSa Simulation with ECM

    20 Apr 2020 | | Contributor(s):: Marco Ruscone, Vincent Noel, Laurence Calzone, Gaelle Letort, Arnau Montagud

    Agent based multicellular simulation with extracellular matrix interaction

  13. A virion infected-cell response tissue simulator

    13 Apr 2020 | | Contributor(s):: Yafei Wang, Randy Heiland, Paul Macklin

    Simulate infected cell response to virus with PhysiCell

  14. A virion replication tissue simulator

    13 Apr 2020 | | Contributor(s):: Yafei Wang, Randy Heiland, Paul Macklin

    Simulate virus replication dynamics with PhysiCell

  15. A virion endocytosis tissue simulator

    13 Apr 2020 | | Contributor(s):: Yafei Wang, Randy Heiland, Paul Macklin

    Simulate virus endocytosis (internalization), ACE2 receptor dynamics with PhysiCell

  16. PhysiCell model for COVID19

    26 Mar 2020 | | Contributor(s):: Randy Heiland, Yafei Wang, Paul Macklin

    Prototype 2-D multicellular simulation of COVID19.

  17. Mechanics Training App for PhysiCell

    14 Feb 2020 | | Contributor(s):: Aneequa Sundus, Furkan Kurtoglu, Mishler, Daniel S, Randy Heiland, Paul Macklin

    Training application for "Mechanics" concept in PhysiCell.

  18. PhysiCell model with SBML intracellular model

    10 Feb 2020 | | Contributor(s):: Randy Heiland

    Each cell will have its own intracellular (metabolic) model that will affect the microenvironment.

  19. Volume Training App for PhysiCell

    10 Feb 2020 | | Contributor(s):: Furkan Kurtoglu, Aneequa Sundus

    Training application for "Volume" concept in PhysiCell.

  20. pc4thanos : Thanos vs. Avengers multicellular demonstrator

    31 Jan 2020 | | Contributor(s):: Paul Macklin

    PhysiCell Thanos vs. Avengers demonstrator for multicellular simulation techniques