Winter Interactive nanoBIO Workshop

By Ballard, Joshua Brendan (editor)

Intelligent Systems Engineering, Indiana University, Bloomington, IN

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Abstract

The Winter Interactive nanoBIO Workshop will walk students and researchers through how to understand a variety of biological problems using simulations based on cloud-based tools on nanoHUB or other easy to use platforms. Each session will include some background material to understand the nature of a problem followed by interactive simulations using straightforward apps that have been developed using extensive, high-quality models. This series will provide an introduction to biological simulation for students wishing to learn about how various problems can be solved, and it will introduce researchers to sections of powerful and multi-scale apps that are extendable to a large number of problems. No coding experience is required.

Sponsored by

Engineered nanoBIO node at Indiana University

Cite this work

Researchers should cite this work as follows:

  • Ballard, Joshua Brendan (2021), "Winter Interactive nanoBIO Workshop," https://nanohub.org/resources/34788.

    BibTex | EndNote

Tags

  1. cancer
  2. cell-cell interactions
  3. cells
  4. COVID19
  5. nano/bio
  6. NanoBio Node at Indiana
  7. SARS-Cov-2

nanoBIO

nanoBIO group image

In This Workshop

  1. Understanding COVID-19 Infection, Immune Response, and Drug Therapy through Multiscale, Multicellular Modeling and Simulation

    Online Presentations | 10 Dec 2020 | Contributor(s): T.J. Sego

    This workshop presents an open-source Python- and XML-scripted multiscale modeling and simulation framework of an epithelial tissue infected by a virus, a simplified cellular immune response and viral and immune-induced tissue damage and shows how to use it to model basic patterns of infection...

  2. Deep Learning for Time Series Illustrated by COVID-19 Infection Studies

    Online Presentations | 04 Feb 2021 | Contributor(s): Geoffrey C. Fox

    We show that one can study several sets of sequences or time-series in terms of an underlying evolution operator which can be learned with a deep learning network.

  3. How Simple Cell-Cell Interactions Lead to Complex Multicellular Dynamics

    Online Presentations | 04 Feb 2021 | Contributor(s): Paul Macklin

    In this talk, we use agent-based simulation models to simulate (1) individual cell behaviors, (2) cell-cell interactions, and (3) cell-environment interactions to show how simple rules can give rise to complex multicellular phenomena. We showcase and explore free, interactive online tools to...

  4. Cancer Games: Interactive Simulation of the Effect of Resource Limitation on Cancer Somatic Evolution using nanoHUB CompuCell3D

    Online Presentations | 04 Feb 2021 | Contributor(s): James A Glazier

    In this interactive mini-workshop we will use a very simple model of cancer somatic evolution and resource limitation based on one originally proposed by Heiko Enderling.

  5. Shape-changing Nanoparticles for Nanomedicine Applications

    Online Presentations | 04 Feb 2021 | Contributor(s): Vikram Jadhao

    I will describe the nanoHUB tool “Nanoparticle Shape Lab” that enables simulations of the shape deformation of charged nanoparticles for a broad variety of nanoparticle material properties including nanoparticle surface charge, pattern, elasticity and solution conditions such...

  6. Biology of COVID-19 Attack on Epithelial Cells, understood from a Modeling and Simulation Perspective

    Online Presentations | 04 Feb 2021 | Contributor(s): Paul Macklin

    n this session, we describe a community-driven effort to iteratively develop a multiscale, spatially-resolved open source model of SARS-CoV-2 dynamics and immune response in tissues.